Biology, Medicine and Bioinformatics

biomcp

genomoncology

661

Access biomedical research data from PubMed, ClinicalTrials.gov and MyVariant.info.

apple-health

the-momentum

280

Access and analyze exported Apple Health data.

HealthChain

healthchainai

229

Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports.

fhir

wso2

137

Search, retrieve, create, update and analyze clinical data via FHIR APIs, with SMART-on-FHIR authentication.

medical

JamesANZ

119

Query medical information, drug databases, drug interactions and clinical guidelines.

fhir

the-momentum

102

Connect to FHIR servers, for example to query patient history in natural language.

google-health

davidmosiah

71

Local-first access to the Google Health API for Fitbit and Pixel Watch activity, sleep, heart, nutrition and reconciled health data.

ChatSpatial

cafferychen777

45

Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization.

omop

OHNLP

41

Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.

biothings

longevity-genie

37

Query the BioThings API for genes, genetic variants, drugs and taxonomic information.

gget

longevity-genie

33

Bioinformatics toolkit for genomics queries and analysis, wrapping the gget library.

encode-toolkit

ammawla

21

Search, download, track and analyze functional genomics experiments from the ENCODE Project.

opengenes

longevity-genie

21

Query the OpenGenes database for aging and longevity research.

medical-terminologies

SidneyBissoli

15

Look up medical terminologies: ICD-11, LOINC, RxNorm, MeSH, ATC, Brazil's CID-10 (DataSUS) and optionally SNOMED CT.

wellness-nourish

davidmosiah

11

Nutrition and hydration tracking: food search, barcode lookup, meal estimation, intake logs and daily summaries.

fulcra-context

fulcradynamics

10

Access personal health and biometric data (sleep stages, heart rate, HRV, glucose, workouts), calendar and location via the Fulcra Life API.

synergy-age

longevity-genie

10

Query the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.

heor-agent

neptun2000

10

Health economics and outcomes research: literature search across PubMed, NICE, CADTH, ICER and more, cost-effectiveness modeling and HTA dossier preparation.

openreadout

openreadout

7

Lets agents read raw lab-instrument files without vendor software: microscopy, mass spectrometry, chromatography, flow cytometry, NMR, electrophysiology, plate readers and qPCR. Returns metadata, images, spectra and traces as JSON, checks files for damage, and converts them to open formats (OME-TIFF, OME-Zarr, mzML, Parquet).

plant-genomics

musharna

7

Plant genomics locus lookup across Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, NCBI BLAST and more, with batch and cross-source queries.

ucsc-genome

hlydecker

6

Interact with the UCSC Genome Browser API to find genomes, chromosomes and more.

techTrend

salwks

6

Academic, code and medical-regulatory trend monitoring across arXiv, PubMed, GitHub, Hugging Face and openFDA, with newspaper-style briefings.

dicom-hl7

NyxToolsDev

5

Bridge DICOM, HL7v2 and FHIR: cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding and integration patterns.

practice-fusion

kushaim

4

Read-only FHIR access to the Practice Fusion EHR: search patients and review appointments, conditions, medications and lab results.

dicomweb

PantelisGeorgiadis

4

Access a DICOMweb archive: search studies, series and instances, inspect metadata, read structured reports, extract PDF text and render frames.

alphafold-sovereign

smaniches

4

AlphaFold DB and other public biomedical sources in a local SQLite knowledge graph for structure confidence, variants, diseases, drug targets and orthology.

mymedi-ai

MyMedi-AI

3

Healthcare billing: ICD-10, CPT and HCPCS code lookup, prior authorization prediction, claims validation, denial-risk scoring and HIPAA compliance auditing.

aria

pkotecha-eng

3

Clinical research tools for trial coordinators and life sciences teams: real-time access to PubMed and ClinicalTrials.gov.

genomics

rewire-bio

3

Discover EGA, ENA, ENCODE, GEO and NCBI datasets; retrieve bounded reads, variants, sequence and signal from indexed genomic files; and query versioned reference evidence.

uniprot

smaniches

3

Query the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay.

flowproof

ajibadedapo

2

Run reproducible Nextflow bioinformatics pipelines with verifiable Workflow Run RO-Crate provenance: container digests, tool versions and checksums.

onekgpd

dnaerys

2

Real-time access to the 1000 Genomes Project dataset.

evipedia

forever-healthy

2

Search Evipedia's evidence-based reviews of health and longevity interventions, fetch conclusions and metadata with PMIDs, and suggest new interventions.

pubmed-search

pubspro

2

Search PubMed and summarize biomedical literature.

gph

Crindo2

1

Match US medical practices with healthcare service vendors for billing, credentialing, EHR, compliance and legal.

wellness-cgm

davidmosiah

1

Local-first continuous glucose monitor data from the Dexcom Developer API and FreeStyle Libre via LibreLink Up.

lecka

mgnirck

1

Race nutrition planning for endurance athletes: carb, sodium and fluid targets plus Lecka product recommendations by race type, conditions and weight.

opdstar-nhi

tatsuju

1

Taiwan National Health Insurance (NHI) data: rejection codes, ICD-10 to procedure mappings, audit indicators and semantic search over NHI documentation.

oura

Rajskij

1

Read-only, self-hosted access to Oura Ring sleep, readiness, activity, stress and heart rate data.

garminconnect-js

DynamicsNinja

1

Garmin Connect data in your assistant: sleep, HRV, training readiness, activities, workouts, weight and more across 193 tools. Use the free hosted connector (https://garmin.ficdev.xyz/claude) or run it locally via npm or the Claude Desktop extension.

decoder-3am

thelongevityvault

1

Classify the likely biological cause of 3am wakeups from symptom descriptions using The Longevity Vault's five-cause framework.

backwork

tylergibbs1

1

Medicare and commercial payer medical policy, prior authorization checks, claim risk and medical code lookup with cited sources, via hosted OAuth remote or local stdio.

pymol

wjgoarxiv

1

Headless PyMOL for molecular visualization, GROMACS/LAMMPS trajectories and clathrate-hydrate cage analysis, including H-bond networks and order parameters.

nutrients

ericblair1903

0

Nutrition analysis from a food photo or text description: calories, macros, vitamins, minerals, allergens and dietary flags.

noodle

helena-bioinformatics

0

Read-only biomedical literature search over a PubMed-derived corpus by natural language or PMID/DOI/PMCID, with citation and semantic graph traversal.

vitamind

JaviMaligno

0

Estimate solar vitamin D synthesis: whether it happens now, minutes needed by Fitzpatrick skin type and viable months by latitude, using Open-Meteo UV data.

biorobotics

SEOSiri-Official

0

Bio-robotics engine that converts biological data from the UniProt API into Cartesian G-code coordinates.

label-image

sachinbkale27

0

Manage images and annotations in the Image Label annotation tool (histopathology, microscopy): bulk upload, annotation clean-up and COCO/YOLO dataset export.