encode-toolkit
ammawla/encode-toolkit
Search, download, track and analyze functional genomics experiments from the ENCODE Project.
Installation, supported tools and required credentials are maintained by the project.
Project details
- GitHub stars
- 21
- Language
- Python
- License
- AGPL-3.0
- Forks
- 5
- Latest release
- v0.3.41mo ago
- Activity
- updated 25d ago
- Platforms listed
- Linux
- ai
- ai-agents
- ai-bio
- bioinformatics
- bioinformatics-tool
- claude
- claude-code
- claude-code-mcp
First MCP server?Start with the basics
Access biomedical research data from PubMed, ClinicalTrials.gov and MyVariant.info.
Access and analyze exported Apple Health data.
Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports.
Search, retrieve, create, update and analyze clinical data via FHIR APIs, with SMART-on-FHIR authentication.
Query medical information, drug databases, drug interactions and clinical guidelines.
Connect to FHIR servers, for example to query patient history in natural language.
Local-first access to the Google Health API for Fitbit and Pixel Watch activity, sleep, heart, nutrition and reconciled health data.
Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization.