ChatSpatial
cafferychen777/ChatSpatial
Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization.
- Local integrations
Installation, supported tools and required credentials are maintained by the project.
Project details
- GitHub stars
- 45
- Language
- Python
- License
- MIT
- Forks
- 14
- Latest release
- v1.6.01d ago
- Activity
- updated 1d ago
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
- python
- single-cell
- spatial-analysis
- spatial-transcriptomics
First MCP server?Start with the basics
Access biomedical research data from PubMed, ClinicalTrials.gov and MyVariant.info.
Access and analyze exported Apple Health data.
Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports.
Search, retrieve, create, update and analyze clinical data via FHIR APIs, with SMART-on-FHIR authentication.
Query medical information, drug databases, drug interactions and clinical guidelines.
Connect to FHIR servers, for example to query patient history in natural language.
Local-first access to the Google Health API for Fitbit and Pixel Watch activity, sleep, heart, nutrition and reconciled health data.
Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.