noodle
helena-bioinformatics/noodle-mcp
Read-only biomedical literature search over a PubMed-derived corpus by natural language or PMID/DOI/PMCID, with citation and semantic graph traversal.
- Cloud integrations
Installation, supported tools and required credentials are maintained by the project.
Project details
- GitHub stars
- 0
- Language
- Python
- License
- Apache-2.0
- Forks
- 0
- Latest release
- noodle-mcp-v0.2.01mo ago
- Activity
- updated 1mo ago
- agent-skill
- bioinformatics
- biomedical-literature
- citation-graph
- mcp-server
- model-context-protocol
- pubmed
- semantic-search
First MCP server?Start with the basics
Access biomedical research data from PubMed, ClinicalTrials.gov and MyVariant.info.
Access and analyze exported Apple Health data.
Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports.
Search, retrieve, create, update and analyze clinical data via FHIR APIs, with SMART-on-FHIR authentication.
Query medical information, drug databases, drug interactions and clinical guidelines.
Connect to FHIR servers, for example to query patient history in natural language.
Local-first access to the Google Health API for Fitbit and Pixel Watch activity, sleep, heart, nutrition and reconciled health data.
Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization.